1. But if what some of the previous responses are true, then there is not much value in going to a higher amperage since internal regulators are designed for recharging the starting battery. Yet most people in my club still only have internally regulated alternators have have upgraded to higher output alternators.
2. So, I know external regulators would be the ultimate answer, but is going to a higher output internally regulated alternator going to improve my recharging time of my house battery?
1. Oh yes there is. A higher amperage alternator will output MORE amperage at any given cruising speed, REGARDLESS of what type of regulator you have. More amperage, less time to charge. Internal regulators are tapering, meaning they don't provide a three stage charge and, first, they take longer to charge (and at a constant voltage) and second, they do not provide what battery manufacturers have been saying for years is the best way to recharge batteries. That's all. Most alternators, regardless of regulator type, will provide a reasonable charge to your battery banks between the 50% and 85% discharged rates because of BATTERY ACCEPTANCE, which is high when they are more heavily discharged. No alternator will, within any reasonable amount of engine running time, completely fill up your batteries, regardless of regulator type. Don't mix the regulator type with the ability of an alternator to recharge BOTH of your battery banks. Besides, your start (reserve) bank rarely needs a charge anyway. Internal regulators were designed for cars, but will also provide output necessary to recharge your house bank. Period, they've been doing that for years, but have obvious shortcomings, discussed at length here on this message board and in most boating electrical system books and articles.
2. Yes, see above.

Your choices are simple:
a. Internally regulated OEM 50-something amp alternator --- longest time to charge
b. Internally regulated higher output alternator --- improved charging because of more amps, means less time to charge
c. Externally regulated higher output alternator --- best bang for the buck in getting the most out of your investment in both the higher output alternator and your expensive batteries, least time to recharge
This is because the BULK and absorption phases initiated by the external regulator inputs more amperage, and thus charge, than an internally regulated tapering charger - these phases are written up in detail in every modern charger manual and all external regulators - pick the MC612 regulator at, say
www.balmar.net and just read how the three stage charge regimen works - by now this should be basic battery charging technique stuff - also, as I've suggested many times before, download and read the Ample Power Primer, Tech Tab at
www.amplepower.com - everyone should read this one!
And, remember: a reasonable charge to your battery banks FROM YOUR ALTERNATOR is between the 50% and 85% discharged rates. For a COMPLETE recharge you NEED to connect to shorepower eventually. Or get SOLAR.
Here's a link to an alternator vendor. It's to a larger amperage alternator, just to get you to their website. Please do not just blindly order this particular alternator, it is only to get you to that website. When ordering any alternator, make sure you get the right mounting.
http://www.ase-supply.com/Leece_Neville_110_603_12V_90_amp_ALTERNATOR_p/mo-110-603.htm